Software
We will attempt to satisfy requests for software which has no cost to the TSC (E.g., Open Source, complimentary licenses, free for Academic use, software paid for by a user or by a Department, etc.). Requests for software that would incur a cost to the TSC will be considered on a case-by-case basis.
| Package | Description | Latest Version |
|---|---|---|
| Abinit | Find total energy, charge density and electronic structure of systems made of electrons and nuclei within DFT | 6.12.3 |
| Octave | High-level interpreted language, primarily intended for numerical computations. Compatible with MATLAB | 3.6.4 |
| Gate | Simulations of Emission Tomography (PET and SPECT), Computed Tomography (CT) and Radiotherapy experiments | 6.1.0 |
| Galaxy | web-based platform for data intensive biomedical research | |
| R | Language and environment for statistical computing and graphics. Mostly compatible with the S language. | 3.2.3 |
| Eclipse | Eclipse IDE for Java Developers | 4.4 (luna) |
| JavaJDK | Java SE Development Kit 8 (JDK) | 1.8.0_40 |
| RStudio | Integrated Development Environment (IDE) for R | |
| Blender | 3D computer graphics software for interactive 3D applications, visualization, animated films, etc. | 2.59.4 |
| JAGS | Just Another Gibbs Sampler | 3.1.0 |
| Scilab | Software for numerical computation | 5.3.3 |
| OpenBUGS | Package for performing Bayesian inference Using Gibbs Sampling | 3.2.1 |
| OpenMM | A toolkit for molecular simulation | 6.0.1 |
| TISEAN | Nonlinear Time Series Analysis | 3.0.1 |
| ESS++ | Bayesian variable selection for linear regression using evolutionary Monte Carlo | 0.1.0 |
| Python | Programming Language (EPD 7.2.2 distro with numpy & 100+ addons) | 2.7.2 |
| GCC | GNU Compiler collection ( C, C++, Fortran) | 4.6.3 |
| lapack | LAPACK libraries for numerical linear algebra | 3.0 |
| blas | BLAS (Basic Linear Algebra Subprograms) library | 3.0 |
| GSL | GNU Scientific Library for numerical analysis | 1.13 |
| CUDA SDK | parallel computing architecture for scientific computing on Nvidia GPUs | 3.2 |
| MarvinBeans | ||
| Macaulay2 | ||
| OpenMPI | ||
| PlatformMPI | Platform MPI Implementation | 7.01 |
| MPICH1 | ||
| MPICH2 | ||
| VNC Viewer | Windows client to connect to VNC servers. |